Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-08-21 11:32:26,633 [585] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-08-21 11:32:26,762 [585] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-08-21 11:32:26,767 [585] INFO pulse.unloader: ------------------------------------------------------------------------
2024-08-21 11:32:26,768 [585] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-08-21 11:32:26,768 [585] INFO pulse.unloader: ------------------------------------------------------------------------
2024-08-21 11:32:26,799 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:26,800 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:26,800 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:26,801 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:26,970 [585] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-08-21 11:32:27,775 [585] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-08-21 11:32:27,792 [585] INFO pulse.unloader:
Do an intial solve
2024-08-21 11:32:27,881 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:27,881 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:27,882 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:27,882 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:27,883 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:32:28,374 [585] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-08-21 11:32:28,487 [585] DEBUG UFL_LEGACY: Blocks of each mode:
2024-08-21 11:32:28,701 [585] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-08-21 11:33:06,886 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:06,887 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:06,887 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:06,888 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:06,888 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:07,070 [585] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-08-21 11:33:07,144 [585] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-08-21 11:33:07,333 [585] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-08-21 11:33:10,775 [585] INFO pulse.unloader:
Iteration: 0
2024-08-21 11:33:14,337 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-08-21 11:33:14,378 [585] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-08-21 11:33:18,555 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:33:18,559 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-08-21 11:33:18,604 [585] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-08-21 11:33:18,995 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:33:19,038 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:33:19,039 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:33:19,080 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:33:19,081 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:33:19,117 [585] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-08-21 11:33:19,270 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:19,271 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:19,271 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:19,272 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:19,272 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:19,565 [585] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-08-21 11:33:19,639 [585] DEBUG UFL_LEGACY: Blocks of each mode:
2024-08-21 11:33:19,846 [585] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-08-21 11:33:58,140 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:58,140 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:58,141 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:58,141 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:58,142 [585] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-08-21 11:33:58,280 [585] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-08-21 11:33:58,354 [585] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-08-21 11:33:58,543 [585] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-08-21 11:34:01,968 [585] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-08-21 11:34:02,145 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,146 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,188 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,189 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,230 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,231 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,268 [585] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-08-21 11:34:02,280 [585] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-08-21 11:34:02,280 [585] INFO pulse.unloader:
Iteration: 1
2024-08-21 11:34:02,455 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,456 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,497 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,498 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,538 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,539 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:02,575 [585] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-08-21 11:34:05,579 [585] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-08-21 11:34:05,759 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:05,760 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:05,801 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:05,802 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:05,843 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:05,844 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:05,881 [585] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-08-21 11:34:05,893 [585] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-08-21 11:34:05,894 [585] INFO pulse.unloader:
Iteration: 2
2024-08-21 11:34:06,069 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:06,070 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:06,112 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:06,113 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:06,153 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:06,154 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:06,191 [585] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-08-21 11:34:09,190 [585] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-08-21 11:34:09,366 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,367 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,408 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,410 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,451 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,452 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,489 [585] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-08-21 11:34:09,500 [585] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-08-21 11:34:09,500 [585] INFO pulse.unloader:
Iteration: 3
2024-08-21 11:34:09,676 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,678 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,718 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,719 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,759 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,761 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:09,800 [585] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-08-21 11:34:12,796 [585] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-08-21 11:34:12,972 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:12,973 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,015 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,016 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,057 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,058 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,096 [585] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-08-21 11:34:13,108 [585] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-08-21 11:34:13,108 [585] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-08-21 11:34:13,285 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,286 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,327 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,328 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,368 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-08-21 11:34:13,369 [585] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()